PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P16850_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 152aa    MW: 16583.8 Da    PI: 10.2204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P16850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.0003456901554
                           HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           r+ ++ ++L++l+ +      +K + a++L +A+ YIk L
  GSMUA_Achr3P16850_001 56 RMGERVAKLQQLVSPF-----GKSDTASVLSEATAYIKFL 90
                           6667788999999887.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8644190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00765096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-45295No hitNo description
SuperFamilySSF474593.01E-954102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-65497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MMMTEVADHK RASHDGFVLR DMSGSSRSHN DSSGGKRPKT SDGGRGAATS TKEKDRMGER  60
VAKLQQLVSP FGKSDTASVL SEATAYIKFL HEQLQVLCAP YLRKAVTGKM EGDDHYSLRS  120
RGLCLVPLSS TFQIARSNGA DLWAPVNTNR KP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392597.18e-94PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ9LT672e-34BH113_ARATH; Transcription factor bHLH113
TrEMBLM0SFA11e-111M0SFA1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P16850_0011e-110(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5272812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-41bHLH family protein